Basic Information
Locus ID:
Sgl22021
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Required for the assembly and or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 31504125 | 31506255 | + | Sgl22021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 53,433.83 Da | 42.50 | 103.68 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 60 | 9.3E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 88 | 366 | 7.85E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 86 | 1.22E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 62 | 4.5E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 104 | 444 | 2.5E-13 | IPR032675 |
| SMART | SM00256 | fbox_2 | 25 | 66 | 0.0021 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 67 | 9.497469 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22660.2 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_021721344.1 | F-box/FBD/LRR-repeat protein At1g16930-like [Chenopodium quinoa] | 0 |
| Q9FNJ5 | F-box/FBD/LRR-repeat protein At5g22660 OS=Arabidopsis thaliana OX=3702 GN=At5g22660 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N0E2 | FBD domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3430 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14946, gene_2052, gene_21862, gene_26502 |
| Amaranthaceae | Atriplex hortensis | 48 | Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590 |
| Amaranthaceae | Salicornia bigelovii | 21 | Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... |
| Amaranthaceae | Salicornia europaea | 14 | Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... |
| Amaranthaceae | Suaeda aralocaspica | 15 | GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... |
| Amaranthaceae | Suaeda glauca | 41 | Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... |
| Amaranthaceae | Chenopodium album | 51 | gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... |
| Amaranthaceae | Chenopodium quinoa | 42 | CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150730 |
| Brassicaceae | Brassica nigra | 1 | BniB01g014240.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039776, Pov_00040470, Pov_00040689 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061951 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29604, nbis-gene-29605 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627161 |
| Solanaceae | Solanum chilense | 1 | SOLCI004431500 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31115_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0268 |