Basic Information
Locus ID:
Sgl21507
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposon protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 21076404 | 21081689 | + | Sgl21507 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 85,469.40 Da | 55.47 | 63.10 | -0.93 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1 | 68 | 2.0E-19 | IPR025452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 392 | - | - |
| Coils | Coil | Coil | 370 | 390 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048491649.1 | uncharacterized protein LOC125492938 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803MBK1 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |