Basic Information
Locus ID:
Sgl21297
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Integrase core domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 16651143 | 16654939 | + | Sgl21297 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 29,910.67 Da | 49.38 | 77.17 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 132 | 203 | 3.22E-15 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 127 | 254 | 1.7E-24 | IPR036397 |
| Coils | Coil | Coil | 244 | 264 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021766991.1 | uncharacterized protein LOC110731437 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A392PCX5 | Retrotransposon protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 18 | Sgl04409, Sgl04410, Sgl04816, Sgl09479, Sgl09480, Sgl21236 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027573 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0024640 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602718 |
| Poaceae | Zea mays | 2 | Zm00001eb026340_P001, Zm00001eb305040_P001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2454 |