Basic Information
Locus ID:
Sgl21220
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA3 | 15374313 | 15401143 | + | Sgl21220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 72,737.95 Da | 32.23 | 88.64 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 53 | 246 | 5.18189E-91 | - |
| Pfam | PF09382 | RQC domain | 450 | 547 | 1.3E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 226 | 5.5E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 596 | 647 | 1.9E-9 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 372 | 6.8E-20 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 386 | 447 | 3.4E-13 | IPR032284 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 445 | 548 | 2.31E-23 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 590 | 647 | 4.8E-11 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 103 | 387 | 1.43E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 247 | 448 | 1.0E-54 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 449 | 569 | 4.0E-32 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 245 | 1.5E-73 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 590 | 648 | 4.6E-10 | IPR044876 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 2.4E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 1.4E-29 | IPR014001 |
| SMART | SM00956 | RQC_2 | 454 | 558 | 4.2E-19 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 54 | 505 | 6.9E-150 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 263 | 419 | 18.973907 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 239 | 21.958439 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 591 | 649 | 14.297459 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9S2K9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_000900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology