Basic Information
Locus ID:
Sgl20406
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 64557703 | 64570355 | + | Sgl20406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 61,658.53 Da | 42.05 | 88.05 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 424 | 545 | 1.65754E-11 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 424 | 548 | 1.4E-10 | IPR002156 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 291 | 366 | 1.98E-15 | IPR036612 |
| Gene3D | G3DSA:3.30.1370.10 | K Homology domain, type 1 | 290 | 377 | 6.9E-17 | IPR036612 |
| Gene3D | G3DSA:3.30.420.10 | - | 419 | 551 | 6.0E-10 | IPR036397 |
| SMART | SM00322 | kh_6 | 291 | 364 | 1.7E-4 | IPR004087 |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13230.1 | RNA-binding KH domain-containing protein. | 0 |
| RefSeq | XP_048499757.1 | RNA-binding protein PNO1-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9VR89 | RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QH48 | KH domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_179710 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20033, jg31056 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_7473, gene_7474, gene_941 |
| Amaranthaceae | Atriplex hortensis | 5 | Ah015855, Ah024537, Ah025239, Ah031162, Ah031163 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_1g012050, BVRB_4g072570, BVRB_4g088630 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg39092, Sbi_jg39152, Sbi_jg54419, Sbi_jg54475 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10975, Seu_jg11016, Seu_jg23213 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00015118, GOSA_00022616 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl00475, Sgl00493, Sgl05521, Sgl05539, Sgl15264, Sgl20406 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015195, gene:ENSEOMG00000035290 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015010, CQ.Regalona.r1.1BG0010920 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30151480, pistato.v30177390 |
| Apiaceae | Apium graveolens | 2 | Ag3G01468, Ag7G00879 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G014370, scaffold036998G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719097, gene-LOC103722556 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1340.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G06753, Ftri2G31871 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13230.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014450m.g.v1.0, Thhalv10021508m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41330.v2.2, Sp3g11460.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g051940.2N, BniB06g025670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1549 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1711, Cgl01G2387 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g05820, gene.Cymno15g03270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0153s00022.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1489 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1109, evm.TU.LG02.1919, evm.TU.LG10.397 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000704, Pov_00019263, Pov_00026366 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.2096, AH09.927, BH09.998, CH02.2967, CH09.1110 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0036240, gene-QOZ80_1BG0086260 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344470.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056022 |
| Poaceae | Oryza coarctata | 3 | Oco02G022840, Oco05G000890, Oco06G000860 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g57910.1, LOC_Os03g02420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G046800, gene-BS78_07G173500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601378, Pt_Chr0601695 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr02G007550, Chr03G017890, Chr03G017910, Chr03G017930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G640500, Tel3E01G278300, Tel7E01G905900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG020430, gene_TRIDC3BG030840 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G152000.1, TraesCS3B02G179200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb151110_P001, Zm00001eb369690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31299 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11314 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1076, evm.TU.LG14.1457, evm.TU.LG17.1209 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g21870, gene.Posoc09g02390 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.34, evm.TU.Scaffold_8_RagTag.1672 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8560, nbisL1-mrna-8623 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22370 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000028l.7 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010347 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22559, nbisL1-mrna-23733 |
| Salicaceae | Populus euphratica | 3 | populus_peu00038, populus_peu17071, populus_peu17115 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606670 |
| Solanaceae | Solanum chilense | 3 | SOLCI003587600, SOLCI005382600, SOLCI006346900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023793 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13056, gene_17896 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2542, TC06G0573 |
| Zosteraceae | Zostera marina | 2 | Zosma04g19230.v3.1, Zosma05g04050.v3.1 |