Basic Information
Locus ID:
Sgl20220
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 61802683 | 61809597 | - | Sgl20220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 34,590.28 Da | 58.75 | 66.97 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01693 | Caulimovirus viroplasmin | 152 | 191 | 3.3E-13 | IPR011320 |
| SUPERFAMILY | SSF55658 | L9 N-domain-like | 151 | 194 | 8.37E-11 | IPR009027 |
| Gene3D | G3DSA:3.40.970.10 | - | 149 | 197 | 4.1E-13 | IPR037056 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021723226.1 | protein MAINTENANCE OF MERISTEMS-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MHX9 | PMD domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah010879, Ah010883 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg60894, Sbi_jg60899 |
| Amaranthaceae | Salicornia europaea | 9 | Seu_jg17617, Seu_jg22467, Seu_jg22477, Seu_jg22478 ... |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019041 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl15092, Sgl20220 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051061 |