halophFGD

Basic Information

Locus ID: Sgl20184

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: gag-polypeptide of LTR copia-type

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB2	61247285	61249084	-	Sgl20184

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.38	62,530.94 Da	36.21	74.17	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14223	gag-polypeptide of LTR copia-type	33	172	2.2E-24	-
Pfam	PF13976	GAG-pre-integrase domain	380	442	1.7E-9	IPR025724
Pfam	PF00665	Integrase core domain	455	535	6.9E-11	IPR001584
SUPERFAMILY	SSF53098	Ribonuclease H-like	446	548	2.15E-27	IPR012337
Gene3D	G3DSA:3.30.420.10	-	442	549	7.3E-26	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	454	549	16.977318	IPR001584
MobiDBLite	mobidb-lite	consensus disorder prediction	182	205	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_010277694.1	PREDICTED: uncharacterized protein LOC104612075 [Nelumbo nucifera]
Swiss-Prot	Q94HW2	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
TrEMBL	Q6L3N8	Putative gag-pol polyprotein, identical OS=Solanum demissum OX=50514 GN=SDM1_42t00010 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg13361, jg15643, jg17891, jg20651, jg20653, jg21237, jg4806 ... jg29893, jg30244, jg40961, jg7917
Amaranthaceae	Atriplex hortensis	25	Ah001266, Ah002056, Ah002367, Ah003293, Ah003514, Ah006193 ... Ah007754, Ah008917, Ah008931, Ah010940, Ah011419, Ah013032, Ah013034, Ah013086, Ah017378, Ah017662, Ah024524, Ah030369, Ah030751, Ah031845, Ah032131, Ah032833, Ah036030, Ah036335, Ah037304
Amaranthaceae	Beta vulgaris	2	BVRB_6g146550, BVRB_9g204970
Amaranthaceae	Salicornia bigelovii	63	Sbi_jg10314, Sbi_jg10315, Sbi_jg14770, Sbi_jg15572 ... Sbi_jg16113, Sbi_jg17495, Sbi_jg18226, Sbi_jg18383, Sbi_jg18684, Sbi_jg2476, Sbi_jg2484, Sbi_jg26067, Sbi_jg27117, Sbi_jg27279, Sbi_jg27519, Sbi_jg29264, Sbi_jg31180, Sbi_jg31474, Sbi_jg32229, Sbi_jg32231, Sbi_jg32617, Sbi_jg32736, Sbi_jg32738, Sbi_jg3356, Sbi_jg3631, Sbi_jg36340, Sbi_jg36342, Sbi_jg3640, Sbi_jg36415, Sbi_jg38511, Sbi_jg39647, Sbi_jg40663, Sbi_jg41048, Sbi_jg41140, Sbi_jg41705, Sbi_jg42265, Sbi_jg43733, Sbi_jg44168, Sbi_jg44281, Sbi_jg46359, Sbi_jg47141, Sbi_jg48320, Sbi_jg48400, Sbi_jg48401, Sbi_jg488, Sbi_jg48870, Sbi_jg50195, Sbi_jg504, Sbi_jg51603, Sbi_jg52071, Sbi_jg53653, Sbi_jg53931, Sbi_jg54329, Sbi_jg54331, Sbi_jg5435, Sbi_jg54417, Sbi_jg5783, Sbi_jg5807, Sbi_jg59451, Sbi_jg60873, Sbi_jg6844, Sbi_jg833, Sbi_jg9479
Amaranthaceae	Salicornia europaea	7	Seu_jg10091, Seu_jg12851, Seu_jg12852, Seu_jg13032 ... Seu_jg1954, Seu_jg4106, Seu_jg4146
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00019359, GOSA_00019360
Amaranthaceae	Suaeda glauca	60	Sgl00071, Sgl02644, Sgl03121, Sgl05159, Sgl07802, Sgl12110 ... Sgl13198, Sgl14400, Sgl14705, Sgl15049, Sgl15476, Sgl19869, Sgl20184, Sgl22248, Sgl22634, Sgl22899, Sgl23686, Sgl24889, Sgl27499, Sgl28002, Sgl28883, Sgl30035, Sgl31192, Sgl31497, Sgl32717, Sgl33933, Sgl34016, Sgl35557, Sgl36534, Sgl38007, Sgl39343, Sgl41336, Sgl42598, Sgl43761, Sgl45347, Sgl46145, Sgl47352, Sgl50170, Sgl50844, Sgl59197, Sgl63160, Sgl65214, Sgl65215, Sgl65590, Sgl67774, Sgl69628, Sgl69629, Sgl69892, Sgl73591, Sgl74691, Sgl74883, Sgl78483, Sgl79203, Sgl80081, Sgl80105, Sgl80113, Sgl80978, Sgl81661, Sgl82518, Sgl82550
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000008916, gene:ENSEOMG00000010980 ... gene:ENSEOMG00000022188, gene:ENSEOMG00000022793, gene:ENSEOMG00000028140, gene:ENSEOMG00000028536, gene:ENSEOMG00000047360, gene:ENSEOMG00000050733
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013570, CQ.Regalona.r1.1AG0013580 ... CQ.Regalona.r1.1AG0013990, CQ.Regalona.r1.1AG0021300, CQ.Regalona.r1.3AG0014740, CQ.Regalona.r1.3AG0015200, CQ.Regalona.r1.3BG0004790, CQ.Regalona.r1.3BG0004800, CQ.Regalona.r1.3BG0024610, CQ.Regalona.r1.5BG0012110, CQ.Regalona.r1.6AG0013250, CQ.Regalona.r1.6BG0007010, CQ.Regalona.r1.6BG0012240, CQ.Regalona.r1.8AG0002520, CQ.Regalona.r1.8BG0017840, CQ.Regalona.r1.9AG0018990
Anacardiaceae	Pistacia vera	3	pistato.v30052560, pistato.v30053580, pistato.v30068690
Arecaceae	Phoenix dactylifera	17	gene-LOC103696044, gene-LOC103697381, gene-LOC103699405 ... gene-LOC103700449, gene-LOC103707210, gene-LOC103708097, gene-LOC103716330, gene-LOC120104336, gene-LOC120105803, gene-LOC120107387, gene-LOC120108467, gene-LOC120108505, gene-LOC120108764, gene-LOC120109997, gene-LOC120111184, gene-LOC120112543, gene-LOC120112567
Asteraceae	Flaveria trinervia	64	Ftri10G10254, Ftri10G15470, Ftri11G07203, Ftri11G09554 ... Ftri11G10276, Ftri11G22929, Ftri12G21154, Ftri12G25985, Ftri12G27605, Ftri12G31456, Ftri13G02067, Ftri13G04656, Ftri13G22306, Ftri13G28892, Ftri13G31575, Ftri13G32292, Ftri14G02473, Ftri14G15922, Ftri14G20381, Ftri14G31496, Ftri14G31680, Ftri15G06256, Ftri15G10269, Ftri15G13177, Ftri15G19009, Ftri15G31679, Ftri16G09915, Ftri16G10908, Ftri16G18915, Ftri16G30816, Ftri17G09914, Ftri17G11273, Ftri17G20630, Ftri18G04226, Ftri18G04748, Ftri18G07083, Ftri18G11385, Ftri18G15367, Ftri18G20876, Ftri18G22499, Ftri1G25788, Ftri1G29142, Ftri1G32750, Ftri3G00643, Ftri3G08013, Ftri3G15860, Ftri3G33175, Ftri3G33659, Ftri4G08181, Ftri4G11612, Ftri5G27356, Ftri6G22134, Ftri6G26803, Ftri8G03844, Ftri8G06020, Ftri8G18954, Ftri8G26529, Ftri8G28036, Ftri9G11688, Ftri9G23177, Ftri9G23803, Ftri9G24001, FtriNA12345, FtriNA30702
Brassicaceae	Arabidopsis thaliana	1	AT1G48720.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10001863m.g.v1.0, Thhalv10015660m.g.v1.0 ... Thhalv10015996m.g.v1.0, Thhalv10027963m.g.v1.0, Thhalv10028209m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g18990.v2.2, Sp4g04730.v2.2, Sp4g08810.v2.2
Brassicaceae	Brassica nigra	20	BniB01g031300.2N, BniB01g036960.2N, BniB01g042700.2N ... BniB02g014120.2N, BniB02g028290.2N, BniB02g028300.2N, BniB03g033370.2N, BniB03g061610.2N, BniB03g061620.2N, BniB04g056030.2N, BniB05g059210.2N, BniB06g021920.2N, BniB07g035480.2N, BniB07g046360.2N, BniB07g050170.2N, BniB08g014280.2N, BniB08g014290.2N, BniB08g058900.2N, BniB08g061820.2N, BniB08g066580.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2300
Casuarinaceae	Casuarina glauca	1	Cgl03G2438
Dunaliellaceae	Dunaliella salina	1	Dusal.0807s00005.v1.0
Plantaginaceae	Plantago ovata	7	Pov_00010110, Pov_00031149, Pov_00032366, Pov_00034761 ... Pov_00035673, Pov_00036616, Pov_00039562
Plumbaginaceae	Limonium bicolor	5	Lb3G20825, Lb4G21597, Lb5G27056, Lb5G27418, Lb8G36524
Poaceae	Echinochloa crus-galli	57	AH01.109, AH01.1978, AH02.1271, AH02.3898, AH03.2805 ... AH03.762, AH04.1771, AH05.2940, AH05.2990, AH06.1434, AH06.1695, AH06.2795, AH06.803, AH07.1728, AH08.1250, AH08.503, AH09.2111, BH01.1890, BH01.2169, BH01.2953, BH02.2684, BH02.3865, BH02.3866, BH02.4610, BH03.237, BH03.60, BH04.1029, BH05.3326, BH06.1175, BH06.2547, BH08.537, CH01.1300, CH01.2620, CH01.2621, CH01.3147, CH01.5048, CH02.2196, CH02.2560, CH02.3849, CH02.637, CH02.950, CH03.1651, CH03.2085, CH03.493, CH04.2124, CH04.2495, CH04.697, CH05.1617, CH05.334, CH05.3701, CH06.1348, CH06.1985, CH08.1932, CH08.658, CH09.1015, CH09.167, CH09.2745
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0015670.1, HORVU.MOREX.r3.1HG0066750.1 ... HORVU.MOREX.r3.3HG0224470.1.CDS1, HORVU.MOREX.r3.4HG0415120.1, HORVU.MOREX.r3.6HG0547470.1.CDS1, HORVU.MOREX.r3.6HG0587770.1.CDS1
Poaceae	Lolium multiflorum	44	gene-QYE76_000448, gene-QYE76_000804, gene-QYE76_003749 ... gene-QYE76_004316, gene-QYE76_005530, gene-QYE76_005565, gene-QYE76_006936, gene-QYE76_007528, gene-QYE76_013192, gene-QYE76_016518, gene-QYE76_018602, gene-QYE76_018691, gene-QYE76_019173, gene-QYE76_019250, gene-QYE76_024579, gene-QYE76_026001, gene-QYE76_027456, gene-QYE76_035199, gene-QYE76_035200, gene-QYE76_037034, gene-QYE76_038007, gene-QYE76_038229, gene-QYE76_038435, gene-QYE76_038957, gene-QYE76_040943, gene-QYE76_040945, gene-QYE76_042722, gene-QYE76_045406, gene-QYE76_046197, gene-QYE76_049239, gene-QYE76_052452, gene-QYE76_057770, gene-QYE76_057873, gene-QYE76_062537, gene-QYE76_062550, gene-QYE76_062820, gene-QYE76_065276, gene-QYE76_065640, gene-QYE76_065776, gene-QYE76_065986, gene-QYE76_066626, gene-QYE76_068212, gene-QYE76_068229, gene-QYE76_070953
Poaceae	Oryza coarctata	43	Oco02G006660, Oco02G019280, Oco02G019290, Oco03G012810 ... Oco04G008540, Oco04G009570, Oco05G002490, Oco05G011710, Oco06G006680, Oco06G009100, Oco06G015120, Oco06G028080, Oco08G001570, Oco08G001650, Oco09G002940, Oco09G008080, Oco09G012240, Oco10G003770, Oco10G005060, Oco10G005680, Oco10G005850, Oco10G009090, Oco10G009890, Oco11G007440, Oco11G009550, Oco12G013420, Oco13G006170, Oco14G001690, Oco14G003980, Oco15G008330, Oco16G005370, Oco16G005610, Oco17G009110, Oco19G002060, Oco19G004160, Oco20G001270, Oco20G002820, Oco20G002930, Oco20G007810, Oco23G010310, Oco24G003810, Oco24G004580, Oco24G009910
Poaceae	Oryza sativa	1	LOC_Os03g39510.1
Poaceae	Paspalum vaginatum	7	gene-BS78_05G080800, gene-BS78_06G084000, gene-BS78_K193200 ... gene-BS78_06G139100, gene-BS78_10G077500, gene-BS78_10G159700, gene-BS78_K195100
Poaceae	Sporobolus alterniflorus	20	Chr04G017220, Chr05G018240, Chr06G005710, Chr07G019690 ... Chr08G018600, Chr08G024130, Chr09G020220, Chr10G012520, Chr10G015220, Chr11G003510, Chr11G016770, Chr12G022020, Chr13G007230, Chr15G024310, Chr19G006210, Chr20G010480, Chr21G007250, Chr22G009440, Chr25G014610, Chr30G012940
Poaceae	Triticum dicoccoides	1	gene_TRIDC3AG044630
Poaceae	Zoysia japonica	66	nbis-gene-1054, nbis-gene-1055, nbis-gene-1412, nbis-gene-43 ... nbis-gene-14212, nbis-gene-14861, nbis-gene-15427, nbis-gene-15630, nbis-gene-15725, nbis-gene-19460, nbis-gene-21225, nbis-gene-21686, nbis-gene-24518, nbis-gene-24583, nbis-gene-25303, nbis-gene-27514, nbis-gene-27636, nbis-gene-27713, nbis-gene-27714, nbis-gene-27784, nbis-gene-28014, nbis-gene-30414, nbis-gene-32609, nbis-gene-35681, nbis-gene-36558, nbis-gene-36562, nbis-gene-38079, nbis-gene-38613, nbis-gene-39330, nbis-gene-39686, nbis-gene-41331, nbis-gene-42009, nbis-gene-42243, nbis-gene-42273, nbis-gene-42422, nbis-gene-43290, nbis-gene-43294, nbis-gene-43353, nbis-gene-43487, nbis-gene-43488, nbis-gene-44548, nbis-gene-44755, nbis-gene-46470, nbis-gene-46724, nbis-gene-46725, nbis-gene-48654, nbis-gene-48697, nbis-gene-48755, nbis-gene-50850, nbis-gene-53428, nbis-gene-53766, nbis-gene-54142, nbis-gene-54654, nbis-gene-54888, nbis-gene-55264, nbis-gene-55371, nbis-gene-55427, nbis-gene-55505, nbis-gene-55590, nbis-gene-56217, nbis-gene-56276, nbis-gene-57745, nbis-gene-58609, nbis-gene-58832, nbis-gene-59188, nbis-gene-6737
Poaceae	Zoysia macrostachya	11	Zma_g13181, Zma_g19341, Zma_g20910, Zma_g22746, Zma_g22808 ... Zma_g25144, Zma_g3090, Zma_g31622, Zma_g31931, Zma_g32256, Zma_g7840
Posidoniaceae	Posidonia oceanica	11	gene.Posoc01g08260, gene.Posoc01g40100, gene.Posoc02g02430 ... gene.Posoc02g14700, gene.Posoc02g25230, gene.Posoc02g25250, gene.Posoc02g27820, gene.Posoc04g05590, gene.Posoc04g07080, gene.Posoc04g09410, gene.Posoc05g10610
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_11_RagTag.1441 ... evm.TU.Scaffold_11_RagTag.560, evm.TU.Scaffold_16_RagTag.628, evm.TU.Scaffold_17_RagTag.384, evm.TU.Scaffold_17_RagTag.516, evm.TU.Scaffold_2252_RagTag.1, evm.TU.Scaffold_6_RagTag.1532
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-25091, nbisL1-mrna-3597
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-20098
Rhizophoraceae	Kandelia candel	6	add.evm.TU.utg000003l.31, add.evm.TU.utg000008l.273 ... add.evm.TU.utg000008l.299, add.evm.TU.utg000016l.379, add.evm.TU.utg000023l.128, add.evm.TU.utg000027l.87
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16965, nbisL1-mrna-17864
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-24661
Salicaceae	Populus euphratica	1	populus_peu38222
Solanaceae	Lycium barbarum	37	gene-LOC132601360, gene-LOC132601369, gene-LOC132601399 ... gene-LOC132605275, gene-LOC132607982, gene-LOC132608198, gene-LOC132609336, gene-LOC132611095, gene-LOC132612223, gene-LOC132612892, gene-LOC132613204, gene-LOC132613281, gene-LOC132613300, gene-LOC132614321, gene-LOC132617886, gene-LOC132619423, gene-LOC132619628, gene-LOC132620041, gene-LOC132624392, gene-LOC132624443, gene-LOC132628295, gene-LOC132628468, gene-LOC132628808, gene-LOC132630258, gene-LOC132630281, gene-LOC132630362, gene-LOC132637203, gene-LOC132637356, gene-LOC132637498, gene-LOC132637917, gene-LOC132637935, gene-LOC132639253, gene-LOC132639323, gene-LOC132639593, gene-LOC132639739, gene-LOC132643756, gene-LOC132644354
Solanaceae	Solanum chilense	5	SOLCI000138200, SOLCI001482200, SOLCI004090000 ... SOLCI005084300, SOLCI007202000
Solanaceae	Solanum pennellii	25	gene-LOC107001208, gene-LOC107002031, gene-LOC107003809 ... gene-LOC107006531, gene-LOC107009816, gene-LOC107016637, gene-LOC107017310, gene-LOC107019875, gene-LOC107019886, gene-LOC107019897, gene-LOC107021946, gene-LOC107022100, gene-LOC107025078, gene-LOC107027463, gene-LOC107027778, gene-LOC107030006, gene-LOC114074065, gene-LOC114074234, gene-LOC114075084, gene-LOC114076505, gene-LOC114076508, gene-LOC114077138, gene-LOC114077196, gene-LOC114077489, gene-LOC114078100
Tamaricaceae	Reaumuria soongarica	13	STRG.17523_chr09_-, gene_10001, gene_15943, gene_17114 ... gene_17295, gene_2552, gene_3206, gene_3207, gene_3908, gene_6274, gene_7088, gene_861, gene_9907