Basic Information
Locus ID:
Sgl20137
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 60623754 | 60629214 | + | Sgl20137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 126,671.76 Da | 48.32 | 83.63 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 939 | 1062 | 3.93092E-28 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 940 | 1064 | 1.8E-18 | IPR002156 |
| SUPERFAMILY | SSF56219 | DNase I-like | 408 | 641 | 2.88E-31 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 937 | 1064 | 7.28E-11 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 937 | 1068 | 1.2E-13 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 410 | 641 | 1.6E-31 | IPR036691 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 69 | - | - |
| Coils | Coil | Coil | 916 | 936 | - | - |
| Coils | Coil | Coil | 729 | 749 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2N9FQ21 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16736 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |