Basic Information
Locus ID:
Sgl19546
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 50843199 | 50860231 | + | Sgl19546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 48,071.89 Da | 46.02 | 80.19 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 142 | 234 | 4.00392E-30 | - |
| Pfam | PF03952 | Enolase, N-terminal domain | 262 | 323 | 1.9E-13 | IPR020811 |
| Pfam | PF05542 | Protein of unknown function (DUF760) | 313 | 341 | 6.7E-7 | IPR008479 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 120 | 235 | 4.89E-31 | IPR043502 |
| SUPERFAMILY | SSF54826 | Enolase N-terminal domain-like | 261 | 325 | 1.32E-14 | IPR029017 |
| Gene3D | G3DSA:3.30.390.10 | - | 255 | 340 | 4.9E-15 | IPR029017 |
| Gene3D | G3DSA:3.30.70.270 | - | 183 | 210 | 1.7E-36 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 120 | 235 | 1.7E-36 | - |
| SMART | SM01193 | Enolase_N_3 | 254 | 368 | 2.0E-6 | IPR020811 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16130.1 | arabinose kinase. Similar to galactokinase. | 0 |
| RefSeq | XP_048489899.1 | uncharacterized protein LOC104908956 [Beta vulgaris subsp. vulgaris] | 0 |
| O23461 | L-arabinokinase OS=Arabidopsis thaliana OX=3702 GN=ARA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2K3KUV5 | Reverse transcriptase domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g057071 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 10 | Sgl00780, Sgl05792, Sgl13369, Sgl14378, Sgl18575, Sgl19546 ... |
| Brassicaceae | Brassica nigra | 1 | BniB06g033330.2N |
| Poaceae | Echinochloa crus-galli | 1 | AH02.427 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205624 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G819900, Tel2E01G899700, Tel4E01G514500 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615261 |