Basic Information
Locus ID:
Sgl19458
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 48813095 | 48819697 | + | Sgl19458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 70,599.08 Da | 33.65 | 70.33 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 555 | 640 | 1.11446E-14 | - |
| Pfam | PF08284 | Retroviral aspartyl protease | 535 | 643 | 2.8E-22 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 312 | 405 | 3.7E-10 | IPR005162 |
| Pfam | PF00448 | SRP54-type protein, GTPase domain | 116 | 186 | 1.7E-21 | IPR000897 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 119 | 188 | 1.14E-9 | IPR027417 |
| SUPERFAMILY | SSF50630 | Acid proteases | 549 | 591 | 4.29E-6 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 538 | 643 | 6.5E-9 | IPR021109 |
| Gene3D | G3DSA:3.40.50.300 | - | 93 | 189 | 3.5E-22 | IPR027417 |
| SMART | SM00962 | SRP54_3 | 64 | 202 | 7.4E-7 | IPR000897 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 565 | 576 | - | IPR001969 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 78 | - | - |
| Coils | Coil | Coil | 230 | 250 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48900.2 | Signal recognition particle, SRP54 subunit protein. | 0 |
| RefSeq | XP_021757248.1 | uncharacterized protein LOC110722284 [Chenopodium quinoa] | 0 |
| P49972 | Signal recognition particle subunit SRP54 2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A2I5E5 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||