Basic Information
Locus ID:
Sgl19334
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Retroviral aspartyl protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 45996451 | 45998803 | + | Sgl19334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 33,357.58 Da | 45.73 | 85.21 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 2 | 26 | 9.2E-7 | - |
| Pfam | PF17921 | Integrase zinc binding domain | 148 | 203 | 2.0E-18 | IPR041588 |
| SUPERFAMILY | SSF57850 | RING/U-box | 2 | 58 | 1.16E-9 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 215 | 278 | 4.3E-6 | IPR012337 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 50 | 6.4E-11 | IPR013083 |
| Gene3D | G3DSA:1.10.340.70 | - | 122 | 203 | 5.3E-20 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 212 | 281 | 1.9E-5 | IPR036397 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1 | 27 | 8.992817 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 3 | 12 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.3 | - | 0 |
| RefSeq | XP_048491338.1 | uncharacterized protein LOC104899555 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | G9FIF2 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||