Basic Information
Locus ID:
Sgl18300
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 24761553 | 24765250 | + | Sgl18300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 89,338.86 Da | 38.62 | 91.97 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 360 | 595 | 1.50695E-44 | - |
| CDD | cd06222 | RNase_H_like | 618 | 740 | 3.32664E-29 | IPR044730 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 363 | 581 | 1.7E-35 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 619 | 741 | 1.2E-17 | IPR002156 |
| SUPERFAMILY | SSF56219 | DNase I-like | 5 | 105 | 1.13E-15 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 615 | 743 | 4.81E-14 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 307 | 576 | 8.0E-19 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 105 | 3.6E-14 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 616 | 743 | 1.2E-14 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 344 | 620 | 10.495038 | IPR000477 |
| Coils | Coil | Coil | 193 | 213 | - | - |
| Coils | Coil | Coil | 134 | 154 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P16423 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EMX2 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |