Basic Information
Locus ID:
Sgl18295
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 24699268 | 24704124 | - | Sgl18295 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 185,624.84 Da | 42.85 | 88.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 748 | 1015 | 3.08155E-49 | - |
| CDD | cd06222 | RNase_H_like | 1460 | 1580 | 1.3789E-29 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 1461 | 1582 | 4.5E-19 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 753 | 994 | 4.7E-36 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1269 | 1355 | 8.7E-16 | IPR026960 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1457 | 1585 | 2.15E-14 | IPR012337 |
| SUPERFAMILY | SSF56219 | DNase I-like | 262 | 495 | 1.19E-30 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 698 | 979 | 1.19E-14 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 264 | 495 | 1.3E-31 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1458 | 1587 | 1.2E-16 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 734 | 1015 | 13.508391 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1479 | 1584 | 9.923616 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| Coils | Coil | Coil | 583 | 603 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P16423 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9INX5 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |