Basic Information
Locus ID:
Sgl18247
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box kelch-repeat protein At3g06240-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 24068165 | 24069292 | - | Sgl18247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 43,554.64 Da | 46.81 | 104.16 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 236 | 340 | 2.1E-7 | IPR006527 |
| Pfam | PF00646 | F-box domain | 10 | 50 | 4.0E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 60 | 2.09E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 50 | 4.1E-8 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 1.1E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 118 | 341 | 2.8E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 60 | 11.087133 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021858912.1 | F-box/kelch-repeat protein At3g06240-like [Spinacia oleracea] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R497 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_113930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 11 | gene_16218, gene_16226, gene_2540, gene_2541, gene_2830 ... |
| Amaranthaceae | Atriplex hortensis | 8 | Ah007104, Ah007689, Ah007690, Ah018643, Ah021126, Ah021127 ... |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg15003, Sbi_jg15004, Sbi_jg15099, Sbi_jg29991 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26326, Seu_jg28588 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020049, GOSA_00020050, GOSA_00020051 |
| Amaranthaceae | Suaeda glauca | 10 | Sgl01365, Sgl01366, Sgl06440, Sgl06519, Sgl06520, Sgl12989 ... |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000314, gene:ENSEOMG00000003057 ... |
| Amaranthaceae | Chenopodium quinoa | 10 | CQ.Regalona.r1.2AG0015500, CQ.Regalona.r1.2AG0015510 ... |