Basic Information
Locus ID:
Sgl17629
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
SbeI
Description:
1,4-alpha-glucan-branching enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 18084466 | 18101331 | - | Sgl17629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 190,043.81 Da | 45.44 | 77.86 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11321 | AmyAc_bac_euk_BE | 1038 | 1445 | 0.0 | - |
| CDD | cd02854 | E_set_GBE_euk_N | 937 | 1033 | 1.82137E-47 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 345 | 420 | 1.98028E-16 | - |
| Pfam | PF02806 | Alpha amylase, C-terminal all-beta domain | 1465 | 1565 | 4.5E-25 | IPR006048 |
| Pfam | PF02922 | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | 930 | 1014 | 3.5E-19 | IPR004193 |
| Pfam | PF12248 | Farnesoic acid 0-methyl transferase | 53 | 150 | 8.3E-22 | IPR022041 |
| Pfam | PF00128 | Alpha amylase, catalytic domain | 1101 | 1193 | 5.1E-12 | IPR006047 |
| Pfam | PF00651 | BTB/POZ domain | 199 | 296 | 1.9E-9 | IPR000210 |
| Pfam | PF00754 | F5/8 type C domain | 675 | 762 | 8.6E-9 | IPR000421 |
| Pfam | PF00651 | BTB/POZ domain | 336 | 448 | 3.6E-19 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 333 | 447 | 7.53E-21 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 190 | 295 | 7.06E-12 | IPR011333 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 662 | 777 | 1.04E-7 | IPR008979 |
| SUPERFAMILY | SSF51011 | Glycosyl hydrolase domain | 1460 | 1566 | 6.04E-23 | - |
| SUPERFAMILY | SSF81296 | E set domains | 924 | 1023 | 1.86E-19 | IPR014756 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1044 | 1443 | 2.97E-89 | IPR017853 |
| Gene3D | G3DSA:1.25.40.420 | - | 495 | 616 | 3.1E-13 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 890 | 1454 | 7.6E-303 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 1459 | 1574 | 1.4E-43 | IPR013780 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 332 | 494 | 9.1E-25 | IPR011333 |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 926 | 1040 | 7.6E-303 | IPR013783 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 196 | 311 | 6.9E-13 | IPR011333 |
| Gene3D | G3DSA:2.60.120.260 | - | 657 | 781 | 2.9E-5 | - |
| SMART | SM00642 | aamy | 1076 | 1447 | 1.1E-6 | IPR006047 |
| SMART | SM00225 | BTB_4 | 207 | 298 | 2.1E-11 | IPR000210 |
| SMART | SM00225 | BTB_4 | 346 | 450 | 1.0E-13 | IPR000210 |
| SMART | SM00875 | BACK_2 | 470 | 593 | 2.3E-9 | IPR011705 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 207 | 268 | 11.398828 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 346 | 415 | 15.535227 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1589 | 1617 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Reaction:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30600.1 | BTB/POZ domain-containing protein. | 0 |
| RefSeq | XP_010692551.1 | 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q41059 | 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Fragment) OS=Pisum sativum OX=3888 GN=SBEII PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MXD0 | 1,4-alpha-glucan branching enzyme OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6055 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8649 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035916 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39869, Sbi_jg55201 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14460 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014225 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12345, Sgl17629 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000020317, gene:ENSEOMG00000034283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022970, CQ.Regalona.r1.1BG0001290 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048400 |
| Apiaceae | Apium graveolens | 1 | Ag3G02602 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701097 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1057.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03754 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30600.5 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016264m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g013530.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0843 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0853s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g18230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.86 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037415 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21253 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.14, BH06.5, CH06.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0457480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0318660.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_016901 |
| Poaceae | Oryza coarctata | 2 | Oco10G007270, Oco24G004280 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g27880.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G000200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301595, Pt_Chr0306587 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G024690, Chr0G024700, Chr0G024710, Chr14G000310 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G773500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG067750, gene_TRIDC3BG076700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G480600.1, TraesCS3B02G525700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb379580_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53467 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28945 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.513, evm.TU.LG03.514, evm.TU.LG12.1208 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g11240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1352 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9144 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16827 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15299 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.471 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003252 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9565 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18728 |
| Salicaceae | Populus euphratica | 2 | populus_peu15473, populus_peu33116 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628201 |
| Solanaceae | Solanum chilense | 1 | SOLCI004761300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017880 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1881 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2447 |