Basic Information
Locus ID:
Sgl17452
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 16738148 | 16738927 | - | Sgl17452 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 30,236.68 Da | 50.17 | 89.27 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 133 | 253 | 1.36749E-18 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 137 | 254 | 4.8E-16 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 134 | 257 | 1.77E-11 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 131 | 256 | 2.7E-13 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 152 | 257 | 8.794189 | IPR002156 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010680475.2 | uncharacterized protein LOC104895613 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LKW3 | Reverse transcriptase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl10339, Sgl12213, Sgl12320, Sgl15576, Sgl17452, Sgl17603 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715302 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11805 |