Basic Information
Locus ID:
Sgl17396
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Transmembrane protein 115-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 16340355 | 16346130 | - | Sgl17396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 33,952.13 Da | 38.83 | 104.51 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08551 | Eukaryotic integral membrane protein (DUF1751) | 48 | 146 | 2.3E-30 | IPR013861 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 19 | 208 | 2.75E-12 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 15 | 212 | 4.2E-5 | IPR035952 |
| SMART | SM01160 | DUF1751_2 | 48 | 146 | 1.5E-41 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 282 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07950.1 | rhomboid protein-related. | 0 |
| RefSeq | XP_010692485.1 | rhomboid-like protein 19 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LF05 | Rhomboid-like protein 19 OS=Arabidopsis thaliana OX=3702 GN=RBL19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8BIH5 | Rhomboid-like protein 19 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_1g020510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2748, jg9798 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7714 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036055 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39954, Sbi_jg55285 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14379 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014141 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl12102, Sgl12117, Sgl17396, Sgl24729, Sgl29881 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010849, gene:ENSEOMG00000020525 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022180, CQ.Regalona.r1.1BG0002170 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171260 |
| Apiaceae | Apium graveolens | 1 | Ag11G04605 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G000170, scaffold087982G000020 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703978, gene-LOC103708396, gene-LOC113460989 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.12.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G11150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021192m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g056080.2N, BniB07g058770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0628 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g16450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0081s00034.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g33840, gene.Thate02g11260, gene.Thate06g00010 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4033 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1447 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012716 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G04604, Lb1G04608, Lb2G12410 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3582, AH03.3915, AH09.30, BH01.3930, BH03.4205, CH09.74 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0248930, gene-QOZ80_4AG0328240 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0100660.1, HORVU.MOREX.r3.2HG0117980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016738, gene-QYE76_038097, gene-QYE76_039175 |
| Poaceae | Oryza coarctata | 6 | Oco05G013910, Oco06G012420, Oco07G001120, Oco08G000120 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g24390.1, LOC_Os04g01300.2, LOC_Os07g46170.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G349200, gene-BS78_02G373200 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102753, Pt_Chr0305018, Pt_Chr0305979 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr04G011710, Chr07G011120, Chr0G002910, Chr0G003120 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G100500, Tel2E01G278500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1BG052060, gene_TRIDC2AG004250 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G040100.2, TraesCS2A02G135700.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb017450_P004, Zm00001eb089590_P003 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-1523, nbis-gene-33148, nbis-gene-37560 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1173, Zma_g19213, Zma_g20779, Zma_g5696 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1855, evm.TU.LG11.1224 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g34310, gene.Posoc06g00010 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.568, evm.TU.Scaffold_4_RagTag.1634 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13966, nbisL1-mrna-26108 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19167 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14118, nbisL1-mrna-4450 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.899 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001078 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1026, nbisL1-mrna-2152 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20665, nbisL1-mrna-9540 |
| Salicaceae | Populus euphratica | 1 | populus_peu06289 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613704 |
| Solanaceae | Solanum chilense | 1 | SOLCI001477700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015615 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32579_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1276 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38890.v3.1 |