Basic Information
Locus ID:
Sgl17379
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Protein FAR1-RELATED SEQUENCE 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 16180269 | 16185445 | + | Sgl17379 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 114,093.41 Da | 42.24 | 73.05 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02902 | Ulp1 protease family, C-terminal catalytic domain | 10 | 213 | 6.5E-8 | IPR003653 |
| Pfam | PF03101 | FAR1 DNA-binding domain | 332 | 420 | 6.9E-17 | IPR004330 |
| Pfam | PF10551 | MULE transposase domain | 543 | 635 | 1.1E-25 | IPR018289 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 3 | 216 | 5.3E-17 | IPR038765 |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 1 | 220 | 7.6E-22 | - |
| ProSiteProfiles | PS50600 | Ubiquitin-like protease family profile. | 1 | 185 | 9.883331 | IPR003653 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 823 | 859 | 9.396204 | IPR007527 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048498353.1 | protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7N0RCM3 | Protein FAR1-RELATED SEQUENCE OS=Kalanchoe fedtschenkoi OX=63787 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014604, GOSA_00014605, GOSA_00014807, GOSA_00023619 |
| Amaranthaceae | Suaeda glauca | 69 | Sgl00340, Sgl00670, Sgl00740, Sgl00768, Sgl02587, Sgl03588 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37147, Lb3G20849, Lb6G29885 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.16888_chr09_+, STRG.24247_chr10_+ |