Basic Information
Locus ID:
Sgl16900
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 12690794 | 12700578 | - | Sgl16900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 148,107.09 Da | 39.67 | 104.72 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 313 | 601 | 1.07531E-101 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 932 | 1206 | 5.18013E-82 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 627 | 827 | 6.17799E-110 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 315 | 580 | 9.1E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 645 | 779 | 3.5E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 944 | 1158 | 9.0E-18 | IPR011527 |
| Pfam | PF06839 | GRF zinc finger | 1250 | 1293 | 3.0E-11 | IPR010666 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 934 | 1213 | 1.24E-40 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 624 | 843 | 3.37E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 307 | 609 | 5.76E-35 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 896 | 1212 | 9.0E-40 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 293 | 610 | 6.4E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 626 | 856 | 2.4E-69 | IPR027417 |
| SMART | SM00382 | AAA_5 | 654 | 827 | 9.7E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 934 | 1194 | 23.704754 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 317 | 593 | 35.788151 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 627 | 850 | 21.782158 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 752 | 766 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 904 | - | - |
| Coils | Coil | Coil | 1292 | 1312 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_010691965.1 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIL0 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology