Basic Information
Locus ID:
Sgl16483
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 10042042 | 10049791 | - | Sgl16483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 93,777.51 Da | 49.88 | 78.42 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 20 | 174 | 3.93916E-45 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 751 | 792 | 8.18567E-24 | - |
| Pfam | PF04564 | U-box domain | 747 | 818 | 8.6E-19 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 470 | 716 | 5.7E-41 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 30 | 151 | 9.21E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 745 | 817 | 3.0E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 440 | 717 | 1.48E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 450 | 537 | 1.0E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 746 | 820 | 1.3E-28 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 19 | 168 | 2.8E-8 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 538 | 743 | 3.2E-48 | - |
| SMART | SM00220 | serkin_6 | 465 | 729 | 2.4E-34 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 750 | 813 | 1.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 746 | 820 | 38.162117 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 465 | 752 | 33.389469 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 583 | 595 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 471 | 492 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 290 | - | - |
| Coils | Coil | Coil | 409 | 436 | - | - |
| Coils | Coil | Coil | 318 | 338 | - | - |
| Coils | Coil | Coil | 343 | 377 | - | - |
| Coils | Coil | Coil | 290 | 310 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021767019.1 | U-box domain-containing protein 33-like [Chenopodium quinoa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology