Basic Information
Locus ID:
Sgl15992
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 6728637 | 6730038 | - | Sgl15992 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 48,346.75 Da | 34.93 | 89.95 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 47 | 1.4E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 240 | 325 | 2.0E-4 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 64 | 7.59E-17 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 59 | 1.5E-9 | - |
| SMART | SM00256 | fbox_2 | 7 | 47 | 2.6E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 345 | 2.6E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 47 | 10.822189 | IPR001810 |
| Coils | Coil | Coil | 418 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23420.2 | - | 0 |
| RefSeq | XP_048494009.1 | F-box/kelch-repeat protein At3g23880 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW55 | Putative F-box protein At3g23420 OS=Arabidopsis thaliana OX=3702 GN=At3g23420 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0J8B5K8 | F-box domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_012580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14979, gene_14980, gene_15000, gene_16994, gene_2093 ... |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003124, Ah012204, Ah031133, Ah031136 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26525, Sbi_jg26526, Sbi_jg29415, Sbi_jg34037 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15056, Seu_jg6323 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00000790, GOSA_00000791, GOSA_00000792, GOSA_00011322 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl12017, Sgl15992, Sgl31878, Sgl37156, Sgl46157, Sgl46158 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000022421, gene:ENSEOMG00000034528 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0000690, CQ.Regalona.r1.2BG0028260 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.202 |