Basic Information
Locus ID:
Sgl15576
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
CPK24
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 3359462 | 3364208 | + | Sgl15576 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 63,180.94 Da | 46.84 | 77.99 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 131 | 251 | 1.34348E-21 | IPR044730 |
| CDD | cd00051 | EFh | 454 | 513 | 2.83344E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 454 | 514 | 4.0E-7 | IPR002048 |
| Pfam | PF13456 | Reverse transcriptase-like | 132 | 252 | 2.8E-21 | IPR002156 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 310 | 411 | 2.52E-18 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 448 | 543 | 1.11E-24 | IPR011992 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 128 | 257 | 2.53E-8 | IPR012337 |
| Gene3D | G3DSA:1.10.238.10 | - | 432 | 543 | 1.1E-39 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 422 | 515 | 1.1E-39 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 130 | 255 | 1.8E-11 | IPR036397 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 285 | 407 | 4.3E-16 | - |
| SMART | SM00054 | efh_1 | 453 | 481 | 0.83 | IPR002048 |
| SMART | SM00054 | efh_1 | 489 | 517 | 0.45 | IPR002048 |
| SMART | SM00220 | serkin_6 | 190 | 394 | 4.4E-4 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 485 | 520 | 9.771187 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 449 | 484 | 12.05861 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 406 | 9.644348 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 498 | 510 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23580.1 | calmodulin-like domain protein kinase 9. unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+ | 0 |
| RefSeq | XP_030532020.1 | calcium-dependent protein kinase 11 [Rhodamnia argentea] | 0 |
| Q852N6 | Calcium-dependent protein kinase 11 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK11 PE=3 SV=1 | 0 | |
| TrEMBL | J3SIC5 | Calmcium/calmodulin-dependent protein kinase CDPK2 OS=Beta vulgaris subsp. vulgaris OX=3555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl10339, Sgl12213, Sgl12320, Sgl15576, Sgl17452, Sgl17603 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715302 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11805 |