Basic Information
Locus ID:
Sgl15572
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 3317293 | 3323491 | - | Sgl15572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 228,944.77 Da | 47.17 | 81.58 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1152 | 1419 | 9.44692E-56 | - |
| CDD | cd06222 | RNase_H_like | 1870 | 1989 | 4.68234E-31 | IPR044730 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1158 | 1418 | 9.1E-42 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 1870 | 1991 | 3.6E-21 | IPR002156 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 85 | 222 | 9.1E-26 | IPR025558 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1677 | 1760 | 1.4E-11 | IPR026960 |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 663 | 884 | 1.8E-9 | IPR005135 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1109 | 1385 | 1.01E-14 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 656 | 889 | 1.7E-31 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1868 | 1995 | 2.91E-14 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1868 | 1995 | 4.3E-15 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 656 | 890 | 1.2E-32 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1138 | 1419 | 16.19376 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1888 | 1993 | 9.15085 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 521 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 457 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24255.4 | - | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9INX5 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||