Basic Information
Locus ID:
Sgl15535
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 2875802 | 2879767 | - | Sgl15535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 116,150.32 Da | 47.62 | 85.71 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 812 | 874 | 2.0E-13 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 403 | 563 | 6.4E-19 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 8 | 178 | 1.92E-18 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 3 | 180 | 2.2E-18 | IPR036691 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24255.4 | - | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1R3J102 | Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_08374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||