Basic Information
Locus ID:
Sgl15470
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
KH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB2 | 2242400 | 2253860 | + | Sgl15470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 44,827.44 Da | 39.60 | 105.72 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 14 | 49 | 0.0036 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 16 | 83 | 7.56E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 106 | 2.1E-8 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 58 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 17 | 51 | 10.258324 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53060.3 | - | 0 |
| RefSeq | XP_010671414.2 | RNA-binding KH domain-containing protein RCF3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8W4B1 | RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana OX=3702 GN=RCF3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9S152 | RNA-binding KH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_006420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128360 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl04549, Sgl09595, Sgl15470, Sgl22341, Sgl27592, Sgl44438 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000012172 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023689m.g.v1.0, Thhalv10024116m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063820.2N |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0526s00007.v1.0, Dusal.0840s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g03560 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G013900 |
| Poaceae | Zea mays | 4 | Zm00001eb054750_P001, Zm00001eb356040_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31254, nbis-gene-45313 |