Basic Information
Locus ID:
Sgl14688
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DNA RNA polymerases superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 57969028 | 57970185 | - | Sgl14688 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 37,836.32 Da | 55.62 | 68.78 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 216 | 232 | 1.3E-4 | IPR001878 |
| Pfam | PF03732 | Retrotransposon gag protein | 63 | 148 | 4.0E-13 | IPR005162 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 204 | 234 | 2.93E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 194 | 237 | 3.1E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 216 | 232 | 0.0027 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 216 | 232 | 9.059338 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 204 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021726914.1 | uncharacterized protein LOC110694068 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A5N6LCD2 | CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_44532 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||