Basic Information
Locus ID:
Sgl14640
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 57089942 | 57104156 | - | Sgl14640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 100,832.19 Da | 38.72 | 85.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 700 | 858 | 1.28851E-45 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 140 | 496 | 2.91106E-73 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 159 | 573 | 2.7E-64 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 752 | 849 | 1.2E-11 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 612 | 648 | 5.6E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 128 | 496 | 8.87E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 504 | 905 | 2.25E-49 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 607 | 649 | 1.06E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 112 | 201 | 1.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 511 | 906 | 1.1E-55 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 602 | 662 | 9.0E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 374 | 497 | 2.0E-26 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 247 | 366 | 2.4E-9 | IPR038718 |
| SMART | SM00184 | ring_2 | 612 | 650 | 0.001 | IPR001841 |
| SMART | SM00490 | helicmild6 | 766 | 849 | 2.7E-10 | IPR001650 |
| SMART | SM00487 | ultradead3 | 136 | 471 | 3.1E-20 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 155 | 458 | 10.081539 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 612 | 651 | 11.250026 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 736 | 902 | 13.038465 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 627 | 636 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 187 | 207 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_019107268.1 | helicase-like transcription factor CHR28 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology