Basic Information
Locus ID:
Sgl14622
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 56775112 | 56778204 | - | Sgl14622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 116,910.12 Da | 37.19 | 89.84 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 170 | 435 | 2.64525E-44 | - |
| CDD | cd06222 | RNase_H_like | 904 | 1024 | 1.36579E-9 | IPR044730 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 176 | 414 | 3.8E-38 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 711 | 786 | 5.4E-18 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 906 | 1027 | 1.9E-12 | IPR002156 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 123 | 429 | 5.11E-16 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 902 | 1025 | 5.31E-8 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 901 | 1028 | 1.9E-10 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 160 | 420 | 13.016415 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P08548 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |