Basic Information
Locus ID:
Sgl14136
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Retroviral aspartyl protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 46110420 | 46112855 | - | Sgl14136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 88,897.69 Da | 33.65 | 72.73 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 561 | 737 | 4.21396E-96 | - |
| CDD | cd00303 | retropepsin_like | 363 | 428 | 4.49683E-7 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 78 | 172 | 8.5E-13 | IPR005162 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 577 | 736 | 1.1E-29 | IPR000477 |
| Pfam | PF08284 | Retroviral aspartyl protease | 377 | 445 | 1.3E-13 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 501 | 780 | 7.12E-118 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 371 | 449 | 1.4E-8 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 747 | 780 | 6.3E-11 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 523 | 662 | 2.8E-93 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 602 | 737 | 2.8E-93 | IPR043128 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 558 | 737 | 12.073462 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 350 | - | - |
| Coils | Coil | Coil | 4 | 24 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048503086.1 | uncharacterized protein LOC125498837 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7LHG5 | Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2 | 0 | |
| TrEMBL | A2I5E5 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g086710, BVRB_8g189320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25647, Sbi_jg35810 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1509, Seu_jg7247 |
| Amaranthaceae | Suaeda glauca | 30 | Sgl05059, Sgl08276, Sgl09509, Sgl10099, Sgl13129, Sgl14136 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000052022 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0010420 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26473, Lb8G36574 |