Basic Information
Locus ID:
Sgl13147
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ankyrin repeats (3 copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 25189799 | 25190527 | + | Sgl13147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 26,567.90 Da | 49.77 | 63.68 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 34 | 78 | 4.08102E-29 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 36 | 76 | 6.3E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 89 | 1.3E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 90 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 36 | 76 | 5.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 77 | 12.902362 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 51 | 60 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659224.1 | E3 ubiquitin-protein ligase RNF185-like isoform X2 [Hevea brasiliensis] | 0 |
| Q96GF1 | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2UCZ8 | RING-type E3 ubiquitin transferase OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G013100v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology