Basic Information
Locus ID:
Sgl12782
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 21051179 | 21061885 | - | Sgl12782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 49,364.85 Da | 50.59 | 71.60 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.67817E-28 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 74 | 4.5E-18 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 339 | 394 | 6.1E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 246 | 283 | 3.2E-9 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 422 | 455 | 4.7E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 400 | 461 | 1.44E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 240 | 293 | 6.04E-9 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 80 | 2.7E-21 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 335 | 401 | 9.42E-18 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 412 | 459 | 4.3E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 330 | 395 | 9.2E-22 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.6E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 239 | 288 | 6.8E-15 | - |
| SMART | SM00165 | uba_6 | 245 | 285 | 0.0049 | IPR015940 |
| SMART | SM00727 | CBM | 337 | 380 | 4.1E-5 | IPR006636 |
| SMART | SM00165 | uba_6 | 420 | 457 | 7.0E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.8E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 182 | 461 | 1.2E-68 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 417 | 458 | 14.016817 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 243 | 286 | 10.522738 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.586182 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 446 | 461 | 6.1E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 414 | 430 | 6.1E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 431 | 445 | 6.1E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 365 | 387 | 6.1E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 320 | - | - |
| Coils | Coil | Coil | 373 | 393 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021754095.1 | ubiquitin receptor RAD23c-like isoform X3 [Chenopodium quinoa] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8J6CJL9 | Ubiquitin receptor RAD23 OS=Gossypium anomalum OX=47600 GN=CXB51_035406 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology