Basic Information
Locus ID:
Sgl12670
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
B3 DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 19779045 | 19779790 | - | Sgl12670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 24,266.36 Da | 33.00 | 68.55 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02362 | B3 DNA binding domain | 38 | 116 | 3.2E-8 | IPR003340 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 37 | 116 | 2.75E-13 | IPR015300 |
| SUPERFAMILY | SSF68906 | SAP domain | 170 | 205 | 5.68E-6 | IPR036361 |
| Gene3D | G3DSA:2.40.330.10 | - | 23 | 118 | 2.8E-14 | IPR015300 |
| Gene3D | G3DSA:1.10.720.30 | SAP domain | 155 | 212 | 1.2E-6 | IPR036361 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 24 | 117 | 10.700868 | IPR003340 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 171 | 205 | 8.887435 | IPR003034 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017221626.1 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A2P5DZF1 | B3 DNA binding domain containing protein OS=Trema orientale OX=63057 GN=TorRG33x02_237260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||