Basic Information
Locus ID:
Sgl12148
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 15606338 | 15609466 | + | Sgl12148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 117,897.25 Da | 37.13 | 90.69 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 916 | 1036 | 1.08161E-7 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 182 | 447 | 7.54313E-44 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 918 | 1039 | 8.9E-12 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 188 | 428 | 8.3E-37 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 722 | 798 | 3.5E-18 | IPR026960 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 914 | 1037 | 2.28E-7 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 135 | 441 | 1.51E-14 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 913 | 1040 | 5.2E-10 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 172 | 451 | 11.499489 | IPR000477 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P92555 | Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |