halophFGD

Basic Information

Locus ID: Sgl12033

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Clathrin interactor EPSIN

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA2	14753363	14754583	-	Sgl12033

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.25	39,230.12 Da	52.98	86.14	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	14	51	3.4E-9	IPR001810
SUPERFAMILY	SSF81383	F-box domain	11	58	1.31E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	1	49	4.1E-6	-
SMART	SM00256	fbox_2	13	53	6.7E-8	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K12471 (epsin)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G47150.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_021848470.1	F-box/kelch-repeat protein At3g23880-like [Spinacia oleracea]
Swiss-Prot	Q9SD58	Putative F-box protein At3g47150 OS=Arabidopsis thaliana OX=3702 GN=At3g47150 PE=4 SV=2
TrEMBL	A0A0K9S0A2	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009110 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	29	gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... gene_12833, gene_13687, gene_13691, gene_13692, gene_13693, gene_13694, gene_13696, gene_13697, gene_13698, gene_13699, gene_13716, gene_13748, gene_13894, gene_13895, gene_19546, gene_19554, gene_19555, gene_22758, gene_5204, gene_7945, gene_7946, gene_8690, gene_8691, gene_8693
Amaranthaceae	Atriplex hortensis	24	Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... Ah000696, Ah000697, Ah000700, Ah000701, Ah000705, Ah001044, Ah001150, Ah001198, Ah001199, Ah001205, Ah001207, Ah001265, Ah018107, Ah024122, Ah030707, Ah030865, Ah030866, Ah035819
Amaranthaceae	Beta vulgaris	1	BVRB_5g116570
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... Sbi_jg58760, Sbi_jg58781
Amaranthaceae	Salicornia europaea	3	Seu_jg16516, Seu_jg28633, Seu_jg28651
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... GOSA_00015001
Amaranthaceae	Suaeda glauca	31	Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... Sgl12280, Sgl12356, Sgl16239, Sgl17326, Sgl17464, Sgl17510, Sgl17636, Sgl24281, Sgl29456, Sgl34160, Sgl34161, Sgl34162, Sgl39794, Sgl45422, Sgl45476, Sgl55268, Sgl55270, Sgl55271, Sgl55289, Sgl60533, Sgl60535, Sgl60555, Sgl79945, Sgl82377, Sgl82378
Amaranthaceae	Chenopodium album	18	gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... gene:ENSEOMG00000006320, gene:ENSEOMG00000007498, gene:ENSEOMG00000008056, gene:ENSEOMG00000011411, gene:ENSEOMG00000015361, gene:ENSEOMG00000015503, gene:ENSEOMG00000023015, gene:ENSEOMG00000023968, gene:ENSEOMG00000024282, gene:ENSEOMG00000024366, gene:ENSEOMG00000024685, gene:ENSEOMG00000024870, gene:ENSEOMG00000025823, gene:ENSEOMG00000026035, gene:ENSEOMG00000026127, gene:ENSEOMG00000033242
Amaranthaceae	Chenopodium quinoa	23	CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... CQ.Regalona.r1.5AG0022160, CQ.Regalona.r1.5AG0022370, CQ.Regalona.r1.5AG0022400, CQ.Regalona.r1.5AG0022420, CQ.Regalona.r1.5AG0022430, CQ.Regalona.r1.5AG0022480, CQ.Regalona.r1.5AG0022490, CQ.Regalona.r1.5AG0022500, CQ.Regalona.r1.5BG0020380, CQ.Regalona.r1.5BG0023570, CQ.Regalona.r1.5BG0023770, CQ.Regalona.r1.5BG0023800, CQ.Regalona.r1.5BG0023810, CQ.Regalona.r1.5BG0023850, CQ.Regalona.r1.5BG0023860, CQ.Regalona.r1.5BG0023870, CQ.Regalona.r1.7AG0011730, CQ.Regalona.r1.8BG0006100, CQ.Regalona.r1.8BG0013090, CQ.Regalona.r1.8BG0014890, CQ.Regalona.r1.8BG0015780
Plumbaginaceae	Limonium bicolor	2	Lb2G10874, Lb3G17282
Portulacaceae	Portulaca oleracea	15	evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... evm.TU.LG01.2541, evm.TU.LG01.2543, evm.TU.LG01.2544, evm.TU.LG01.2545, evm.TU.LG02.884, evm.TU.LG14.1673, evm.TU.LG14.1674, evm.TU.LG14.1675, evm.TU.LG14.1680, evm.TU.LG14.1681, evm.TU.LG14.1682, evm.TU.LG14.1683