Basic Information
Locus ID:
Sgl11835
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 13275971 | 13281973 | - | Sgl11835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 103,044.49 Da | 35.63 | 71.09 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 615 | 712 | 7.62611E-26 | IPR029413 |
| CDD | cd10317 | RGL4_C | 726 | 912 | 5.31457E-52 | - |
| CDD | cd10320 | RGL4_N | 287 | 582 | 4.28781E-62 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 724 | 911 | 8.6E-52 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 286 | 484 | 5.4E-71 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 643 | 709 | 3.6E-20 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 658 | 712 | 6.67E-7 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 721 | 912 | 7.23E-46 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 618 | 711 | 1.7E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 287 | 588 | 3.7E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 722 | 912 | 4.2E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 282 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_010671398.1 | probable rhamnogalacturonate lyase B [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LV70 | Rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology