Basic Information
Locus ID:
Sgl11729
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SCY1-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 12446166 | 12463422 | + | Sgl11729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.32 | 149,532.31 Da | 39.61 | 81.44 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14011 | PK_SCY1_like | 45 | 349 | 8.91071E-101 | - |
| Pfam | PF00759 | Glycosyl hydrolase family 9 | 914 | 1364 | 6.8E-134 | IPR001701 |
| Pfam | PF00069 | Protein kinase domain | 104 | 347 | 8.6E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 351 | 1.25E-35 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 349 | 606 | 3.04E-13 | IPR016024 |
| SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 910 | 1368 | 6.12E-145 | IPR008928 |
| Gene3D | G3DSA:1.50.10.10 | - | 908 | 1369 | 8.6E-157 | IPR012341 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 104 | 351 | 1.2E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 352 | 624 | 1.9E-40 | IPR011989 |
| SMART | SM00220 | serkin_6 | 39 | 347 | 1.6E-11 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 39 | 347 | 26.661684 | IPR000719 |
| ProSiteProfiles | PS50077 | HEAT repeat profile. | 469 | 506 | 9.1122 | IPR021133 |
| ProSitePatterns | PS00592 | Glycosyl hydrolases family 9 (GH9) active site signature 2. | 1267 | 1293 | - | IPR018221 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 910 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71410.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_010677079.2 | SCY1-like protein 2 A [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C9H8 | SCY1-like protein 2 B OS=Arabidopsis thaliana OX=3702 GN=SCYL2B PE=1 SV=1 | 0 | |
| TrEMBL | A0A498JVN4 | Endoglucanase OS=Malus domestica OX=3750 GN=DVH24_030460 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12288, jg23322 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14307 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024010 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g009710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28515, Sbi_jg2866 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7042 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022060 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11729, Sgl11888, Sgl17218 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014369, gene:ENSEOMG00000035323 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0012400, CQ.Regalona.r1.1BG0013630 |
| Apiaceae | Apium graveolens | 1 | Ag7G01996 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G002790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695938 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2762.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G29818 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22870.1, AT1G71410.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006737m.g.v1.0, Thhalv10018097m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g20350.v2.2, Sp5g26570.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g049320.2N, BniB04g038140.2N, BniB05g068950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1660 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1715 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0389s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14920 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1859 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1233 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021964 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03756 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2331, BH02.2439, CH02.2615 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024570, gene-QOZ80_1BG0075190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053845 |
| Poaceae | Oryza coarctata | 2 | Oco01G014540, Oco02G014870 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g42950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G195000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603334 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015420, Chr05G018420, Chr08G011270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G379500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2BG070740, gene_TRIDC3AG033270 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G221700.2, TraesCS3B02G251500.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb162090_P001, Zm00001eb358200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29243 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8218 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1167, evm.TU.LG20.1377 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9854 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2291 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18000 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.735 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002918 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3266 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11218 |
| Salicaceae | Populus euphratica | 4 | populus_peu16467, populus_peu18070, populus_peu18946 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606201 |
| Solanaceae | Solanum chilense | 1 | SOLCI006700900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004594 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8557 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1192 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06330.v3.1 |