Basic Information
Locus ID:
Sgl11596
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 11377277 | 11380174 | + | Sgl11596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 66,412.33 Da | 34.29 | 70.02 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 262 | 391 | 5.51317E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 18 | 148 | 9.78774E-46 | IPR033734 |
| CDD | cd09612 | Jacalin | 462 | 590 | 4.39492E-41 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 262 | 391 | 5.4E-28 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 18 | 149 | 2.5E-32 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 459 | 590 | 3.6E-30 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 7 | 149 | 1.83E-44 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 250 | 390 | 9.81E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 448 | 589 | 2.09E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 438 | 590 | 6.6E-53 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 147 | 4.0E-56 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 243 | 391 | 1.8E-47 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 459 | 591 | 7.9E-42 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 18 | 149 | 1.3E-43 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 262 | 392 | 1.7E-37 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 251 | 392 | 47.316006 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 149 | 53.468758 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 448 | 591 | 51.902431 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 231 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021851043.1 | jacalin-related lectin 3-like isoform X2 [Spinacia oleracea] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R622 | Jacalin-related lectin 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_109100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology