Basic Information
Locus ID:
Sgl11510
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 10775191 | 10777934 | + | Sgl11510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 52,420.96 Da | 35.86 | 73.61 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 18 | 148 | 1.57912E-47 | IPR033734 |
| CDD | cd09612 | Jacalin | 232 | 342 | 2.83502E-34 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 227 | 342 | 1.1E-25 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 410 | 477 | 4.9E-11 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 18 | 149 | 1.6E-32 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 402 | 477 | 2.35E-19 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 211 | 341 | 2.22E-31 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 7 | 149 | 1.18E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 389 | 478 | 3.2E-24 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 147 | 2.6E-56 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 208 | 342 | 1.9E-34 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 211 | 343 | 7.7E-25 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 18 | 149 | 1.3E-43 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 149 | 53.468758 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 200 | 343 | 32.534386 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 399 | 479 | 24.590202 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_048495353.1 | jacalin-related lectin 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R622 | Jacalin-related lectin 3-like OS=Spinacia oleracea OX=3562 GN=SOVF_109100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology