Basic Information
Locus ID:
Sgl10712
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 5505267 | 5509329 | + | Sgl10712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 48,804.35 Da | 71.69 | 77.08 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 14 | 157 | 2.04051E-42 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 234 | 277 | 1.31018E-23 | - |
| Pfam | PF02225 | PA domain | 82 | 145 | 2.2E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 234 | 277 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 152 | 9.02E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 288 | 2.99E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 194 | 282 | 7.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 163 | 6.6E-29 | - |
| SMART | SM00184 | ring_2 | 235 | 276 | 2.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 277 | 12.046688 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 383 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_010678889.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M399 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology