halophFGD

Basic Information

Locus ID: Sgl10642

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: lipid metabolic process

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA2	5053101	5056899	+	Sgl10642

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.48	39,895.09 Da	43.83	72.94	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF53098	Ribonuclease H-like	4	133	5.31E-32	IPR012337
Gene3D	G3DSA:3.30.420.10	-	2	127	6.4E-28	IPR036397
ProSiteProfiles	PS50994	Integrase catalytic domain profile.	1	124	16.335447	IPR001584
Coils	Coil	Coil	203	223	-	-

Gene Ontology

Biological Process:

GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G74040.1	2-isopropylmalate synthase 1. Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500).	0
RefSeq	XP_022023791.1	uncharacterized protein LOC110924058 [Helianthus annuus]	0
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	0
TrEMBL	A0A834XHQ8	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Senna tora OX=362788 GN=G2W53_002212 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_7937
Amaranthaceae	Suaeda glauca	21	Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... Sgl12810, Sgl15897, Sgl17526, Sgl18057, Sgl45661, Sgl46181, Sgl50847, Sgl60756, Sgl62420, Sgl62918, Sgl68399, Sgl73586, Sgl73874, Sgl77152, Sgl77381
Arecaceae	Cocos nucifera	1	COCNU_10G004270
Asteraceae	Flaveria trinervia	2	Ftri17G04102, Ftri5G14832
Brassicaceae	Brassica nigra	6	BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... BniB05g050720.2N, BniB08g054000.2N, BniB08g054270.2N
Plumbaginaceae	Limonium bicolor	1	Lb1G03974
Poaceae	Lolium multiflorum	4	gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... gene-QYE76_063137
Tamaricaceae	Reaumuria soongarica	1	gene_10413
Zosteraceae	Zostera marina	1	Zosma06g16920.v3.1