Basic Information
Locus ID:
Sgl10579
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 4515083 | 4522906 | + | Sgl10579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 119,302.26 Da | 52.03 | 69.88 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 551 | 853 | 8.60475E-128 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 550 | 852 | 1.6E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 76 | 113 | 1.3E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 71 | 115 | 1.24E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 546 | 857 | 3.53E-82 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 543 | 865 | 1.7E-88 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 117 | 3.5E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 550 | 855 | 49.344559 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 76 | 113 | 11.412541 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 551 | 566 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1041 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1021 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 1094 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1059 | 1075 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 403 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology