Basic Information
Locus ID:
Sgl10339
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 2433942 | 2441819 | + | Sgl10339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 111,002.68 Da | 44.48 | 78.64 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 600 | 720 | 8.89903E-22 | IPR044730 |
| CDD | cd00051 | EFh | 868 | 927 | 5.0618E-12 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 880 | 930 | 7.3E-6 | IPR002048 |
| Pfam | PF13456 | Reverse transcriptase-like | 601 | 721 | 6.5E-21 | IPR002156 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 438 | 491 | 5.6E-8 | IPR026960 |
| SUPERFAMILY | SSF47473 | EF-hand | 862 | 957 | 2.46E-24 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 780 | 816 | 1.63E-7 | IPR011009 |
| SUPERFAMILY | SSF56219 | DNase I-like | 27 | 196 | 6.15E-23 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 597 | 726 | 7.59E-8 | IPR012337 |
| Gene3D | G3DSA:1.10.238.10 | - | 836 | 929 | 2.6E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 745 | 820 | 1.2E-6 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 6 | 197 | 3.2E-24 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 599 | 724 | 4.2E-11 | IPR036397 |
| Gene3D | G3DSA:1.10.238.10 | - | 846 | 957 | 2.6E-39 | - |
| SMART | SM00054 | efh_1 | 903 | 931 | 0.45 | IPR002048 |
| SMART | SM00054 | efh_1 | 867 | 895 | 0.83 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 899 | 934 | 9.771187 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 863 | 898 | 12.05861 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 912 | 924 | - | IPR018247 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38910.1 | calcium-dependent protein kinase 20. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_019107211.1 | uncharacterized protein LOC109136048 [Beta vulgaris subsp. vulgaris] | 0 |
| Q852N6 | Calcium-dependent protein kinase 11 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK11 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LKW3 | Reverse transcriptase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl10339, Sgl12213, Sgl12320, Sgl15576, Sgl17452, Sgl17603 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715302 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11805 |