Basic Information
Locus ID:
Sgl10291
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 1852635 | 1856219 | + | Sgl10291 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 135,809.41 Da | 46.47 | 88.94 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1031 | 1150 | 2.53751E-31 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 313 | 580 | 1.48465E-55 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 1031 | 1152 | 2.0E-21 | IPR002156 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 837 | 921 | 5.2E-13 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 319 | 579 | 4.0E-42 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 60 | 137 | 2.88E-8 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1029 | 1156 | 5.94E-14 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 270 | 546 | 5.78E-15 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 58 | 198 | 9.8E-9 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1029 | 1156 | 4.3E-14 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1049 | 1154 | 8.952705 | IPR002156 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 299 | 580 | 16.603741 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24255.4 | - | 0 |
| RefSeq | XP_021857848.1 | uncharacterized protein LOC110797061 [Spinacia oleracea] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9INX5 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||