Basic Information
Locus ID:
Sgl10278
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA2 | 1752961 | 1753686 | + | Sgl10278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 27,716.26 Da | 45.57 | 75.69 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 181 | 225 | 4.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 231 | 6.24E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 232 | 1.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 182 | 224 | 1.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 225 | 12.504031 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21960.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_048493060.1 | uncharacterized RING finger protein P32A8.03c-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q6GPV5 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P6S5C5 | Putative transcription factor C2H2 family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0171341 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00018972, GOSA_00021088 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl10267, Sgl10278, Sgl15511, Sgl34054, Sgl34088, Sgl34258 ... |