Basic Information
Locus ID:
Sgl09882
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Retroviral aspartyl protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 60740397 | 60746325 | + | Sgl09882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 85,300.36 Da | 41.85 | 82.06 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 541 | 654 | 3.81371E-56 | - |
| CDD | cd01647 | RT_LTR | 313 | 446 | 2.07903E-59 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 314 | 444 | 4.1E-23 | IPR000477 |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 536 | 633 | 7.3E-31 | IPR041373 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 323 | 639 | 6.34E-127 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 339 | 371 | 7.2E-49 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 456 | 545 | 1.2E-33 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 317 | 446 | 7.2E-49 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048503086.1 | uncharacterized protein LOC125498837 [Beta vulgaris subsp. vulgaris] | 0 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | G9FIF2 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||