Basic Information
Locus ID:
Sgl09595
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 54279966 | 54281939 | - | Sgl09595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 26,924.41 Da | 34.13 | 100.16 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 156 | 215 | 3.2E-11 | IPR001611 |
| Pfam | PF00400 | WD domain, G-beta repeat | 14 | 49 | 0.0017 | IPR001680 |
| SUPERFAMILY | SSF52058 | L domain-like | 137 | 233 | 2.19E-25 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 16 | 83 | 2.65E-8 | IPR036322 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 82 | 244 | 2.2E-29 | IPR032675 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 81 | 2.2E-8 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 58 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 17 | 51 | 10.258324 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11160.3 | - | 0 |
| RefSeq | XP_024004118.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Eutrema salsugineum] | 0 |
| TrEMBL | A0A6A2Y091 | WD_REPEATS_REGION domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111792pilonHSYRG00017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128360 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl04549, Sgl09595, Sgl15470, Sgl22341, Sgl27592, Sgl44438 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000012172 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023689m.g.v1.0, Thhalv10024116m.g.v1.0 |
| Brassicaceae | Brassica nigra | 1 | BniB05g063820.2N |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0526s00007.v1.0, Dusal.0840s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g03560 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr0G013900 |
| Poaceae | Zea mays | 4 | Zm00001eb054750_P001, Zm00001eb356040_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31254, nbis-gene-45313 |