HalophFGD

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Basic Information
Locus ID: Sgl09579
Species & Taxonomic ID: Suaeda glauca & 397272
Genome Assembly: GWHEQCX00000000
Description: High mobility group
Maps and Mapping Data
Chromosome Start End Strand ID
chrB1 53951943 53952373 + Sgl09579
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.81 11,533.93 Da 54.10 84.27 -0.12
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF46774 ARID-like 14 61 7.85E-9 IPR036431
Gene3D G3DSA:1.10.150.60 - 8 68 3.0E-7 IPR036431
ProSiteProfiles PS51011 ARID domain profile. 1 60 12.148499 IPR001606
MobiDBLite mobidb-lite consensus disorder prediction 75 103 - -
Gene Ontology
Molecular Function:
GO:0003677 (DNA binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G04880.1 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. 0
RefSeq XP_021837956.1 high mobility group B protein 15-like isoform X2 [Spinacia oleracea] 0
Swiss-Prot Q9MAT6 High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 0
TrEMBL A0A0K9RKE8 High mobility group B protein 15-like OS=Spinacia oleracea OX=3562 GN=SOVF_061930 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg11697, jg12835, jg24655, jg38463
Aizoaceae Mesembryanthemum crystallinum 3 gene_19196, gene_4819, gene_8695
Amaranthaceae Atriplex hortensis 2 Ah019653, Ah022545
Amaranthaceae Beta vulgaris 2 BVRB_3g058900, BVRB_3g065800
Amaranthaceae Salicornia bigelovii 6 Sbi_jg38479, Sbi_jg39953, Sbi_jg55284, Sbi_jg59490 ...
Sbi_jg63166, Sbi_jg6583
Amaranthaceae Salicornia europaea 4 Seu_jg14380, Seu_jg14381, Seu_jg15342, Seu_jg23733
Amaranthaceae Suaeda aralocaspica 2 GOSA_00006439, GOSA_00020673
Amaranthaceae Suaeda glauca 21 Sgl01872, Sgl02847, Sgl04534, Sgl07051, Sgl07968, Sgl09579 ...
Sgl21283, Sgl26624, Sgl36255, Sgl37437, Sgl41528, Sgl42695, Sgl47429, Sgl64228, Sgl65406, Sgl68679, Sgl69770, Sgl72151, Sgl75715, Sgl79609, Sgl82077
Amaranthaceae Chenopodium album 8 gene:ENSEOMG00000016048, gene:ENSEOMG00000019886 ...
gene:ENSEOMG00000030197, gene:ENSEOMG00000032478, gene:ENSEOMG00000043978, gene:ENSEOMG00000044495, gene:ENSEOMG00000051042, gene:ENSEOMG00000051579
Amaranthaceae Chenopodium quinoa 10 CQ.Regalona.r1.1AG0022190, CQ.Regalona.r1.1AG0022200 ...
CQ.Regalona.r1.1BG0002140, CQ.Regalona.r1.1BG0002150, CQ.Regalona.r1.1BG0002160, CQ.Regalona.r1.3AG0011160, CQ.Regalona.r1.3AG0025630, CQ.Regalona.r1.3BG0011350, CQ.Regalona.r1.3BG0026550, CQ.Regalona.r1.8BG0002990
Anacardiaceae Pistacia vera 2 pistato.v30048820, pistato.v30150900
Apiaceae Apium graveolens 6 Ag2G01334, Ag5G02152, Ag8G02166, Ag9G00965, AgUnG01645 ...
AgUnG01646
Arecaceae Cocos nucifera 5 COCNU_01G006900, COCNU_03G005820, COCNU_07G014940 ...
COCNU_10G009300, scaffold002988G000020
Arecaceae Phoenix dactylifera 7 gene-LOC103697941, gene-LOC103701064, gene-LOC103708729 ...
gene-LOC103710645, gene-LOC103718821, gene-LOC103723801, gene-LOC103724208
Asparagaceae Asparagus officinalis 5 AsparagusV1_02.894.V1.1, AsparagusV1_04.2361.V1.1 ...
AsparagusV1_05.1074.V1.1, AsparagusV1_09.1075.V1.1, AsparagusV1_09.1076.V1.1
Asteraceae Flaveria trinervia 2 Ftri14G10963, Ftri17G21180
Brassicaceae Arabidopsis thaliana 4 AT1G04880.1, AT1G55650.1, AT1G76110.1, AT3G13350.1
Brassicaceae Eutrema salsugineum 6 Thhalv10007631m.g.v1.0, Thhalv10011675m.g.v1.0 ...
Thhalv10017702m.g.v1.0, Thhalv10017860m.g.v1.0, Thhalv10018826m.g.v1.0, Thhalv10021143m.g.v1.0
Brassicaceae Schrenkiella parvula 6 Sp1g03720.v2.2, Sp1g41270.v2.2, Sp3g11550.v2.2 ...
Sp4g15180.v2.2, Sp5g31230.v2.2, SpUn0748_0010.v2.2
Brassicaceae Brassica nigra 10 BniB01g051840.2N, BniB01g051860.2N, BniB01g051880.2N ...
BniB02g001990.2N, BniB02g032930.2N, BniB03g001110.2N, BniB03g054940.2N, BniB04g053820.2N, BniB06g025750.2N, BniB06g045880.2N
Casuarinaceae Casuarina equisetifolia 3 Ceq01G1573, Ceq03G0812, Ceq07G0733
Casuarinaceae Casuarina glauca 3 Cgl01G1736, Cgl03G0892, Cgl07G0780
Cymodoceaceae Cymodocea nodosa 4 gene.Cymno05g07680, gene.Cymno07g12670, gene.Cymno08g00690 ...
gene.Cymno18g02580
Hydrocharitaceae Thalassia testudinum 4 gene.Thate03g20770, gene.Thate04g22820, gene.Thate08g09940 ...
gene.Thate09g12800
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-4220, nbisL1-mrna-5389
Nitrariaceae Nitraria sibirica 3 evm.TU.LG05.2124, evm.TU.LG06.142, evm.TU.LG11.564
Plantaginaceae Plantago ovata 6 Pov_00004320, Pov_00020596, Pov_00020597, Pov_00020598 ...
Pov_00021370, Pov_00036131
Plumbaginaceae Limonium bicolor 2 Lb4G26373, Lb6G29696
Poaceae Echinochloa crus-galli 4 AH07.1399, BH07.1714, CH07.1553, CH07.1556
Poaceae Eleusine coracana subsp. coracana 2 gene-QOZ80_2AG0130580, gene-QOZ80_2BG0185840
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.6HG0585990.1
Poaceae Oryza coarctata 4 Oco03G009960, Oco04G010260, Oco17G010950, Oco18G010860
Poaceae Oryza sativa 2 LOC_Os02g27060.1, LOC_Os09g37250.1
Poaceae Paspalum vaginatum 1 gene-BS78_04G126700
Poaceae Sporobolus alterniflorus 4 Chr06G011760, Chr09G011890, Chr13G013410, Chr15G013490
Poaceae Thinopyrum elongatum 1 Tel6E01G396400
Poaceae Triticum dicoccoides 2 gene_TRIDC6AG028300, gene_TRIDC6BG035370
Poaceae Triticum aestivum 3 TraesCS6A02G189700.1, TraesCS6B02G218500.1 ...
TraesCS6D02G180000.1
Poaceae Zea mays 2 Zm00001eb203110_P001, Zm00001eb240740_P001
Poaceae Zoysia japonica 1 nbis-gene-21001
Poaceae Zoysia macrostachya 1 Zma_g13501
Portulacaceae Portulaca oleracea 5 evm.TU.LG02.676, evm.TU.LG03.552, evm.TU.LG07.40 ...
evm.TU.LG09.1841, evm.TU.LG12.1172
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g16690, gene.Posoc02g12220, gene.Posoc05g02250
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_3_RagTag.1374, evm.TU.Scaffold_6_RagTag.985 ...
evm.TU.Scaffold_7_RagTag.399, evm.TU.Scaffold_8_RagTag.1688
Rhizophoraceae Carallia pectinifolia 6 nbisL1-mrna-15681, nbisL1-mrna-1701, nbisL1-mrna-18875 ...
nbisL1-mrna-8576, nbisL1-mrna-8606, nbisL1-mrna-9114
Rhizophoraceae Ceriops tagal 4 nbisL1-mrna-18885, nbisL1-mrna-3151, nbisL1-mrna-3342 ...
nbisL1-mrna-4078
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-15015, nbisL1-mrna-2621, nbisL1-mrna-6899 ...
nbisL1-mrna-852
Rhizophoraceae Kandelia candel 4 evm.TU.utg000002l.812, evm.TU.utg000011l.626 ...
evm.TU.utg000018l.6, evm.TU.utg000019l.411
Rhizophoraceae Kandelia obovata 3 Maker00001843, Maker00003204, Maker00010629
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-12244, nbisL1-mrna-15138, nbisL1-mrna-8773 ...
nbisL1-mrna-9348
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-18126, nbisL1-mrna-23721, nbisL1-mrna-4378
Salicaceae Populus euphratica 4 populus_peu01375, populus_peu15425, populus_peu17089 ...
populus_peu24239
Solanaceae Lycium barbarum 5 gene-LOC132602578, gene-LOC132604171, gene-LOC132610800 ...
gene-LOC132628827, gene-LOC132636276
Solanaceae Solanum chilense 2 SOLCI003720900, SOLCI004419800
Solanaceae Solanum pennellii 3 gene-LOC107005546, gene-LOC107005746, gene-LOC107029413
Tamaricaceae Reaumuria soongarica 3 gene_11294, gene_1140, gene_17910
Tamaricaceae Tamarix chinensis 3 TC04G2506, TC06G0601, TC12G2151
Zosteraceae Zostera marina 6 Zosma01g28610.v3.1, Zosma02g09640.v3.1, Zosma02g09650.v3.1 ...
Zosma02g15870.v3.1, Zosma04g27200.v3.1, Zosma06g08490.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.