Basic Information
Locus ID:
Sgl09428
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
DXS1
Description:
1-deoxy-D-xylulose-5-phosphate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 50521124 | 50533516 | + | Sgl09428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 67,425.12 Da | 43.10 | 70.28 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07033 | TPP_PYR_DXS_TK_like | 510 | 578 | 2.52365E-32 | - |
| Pfam | PF08069 | Ribosomal S13/S15 N-terminal domain | 384 | 414 | 1.4E-11 | IPR012606 |
| Pfam | PF02779 | Transketolase, pyrimidine binding domain | 494 | 578 | 1.4E-18 | IPR005475 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 475 | 578 | 9.68E-30 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 493 | 596 | 1.6E-27 | - |
| Gene3D | G3DSA:4.10.860.130 | - | 389 | 433 | 3.1E-22 | - |
| SMART | SM01386 | Ribosomal_S13_N_2 | 353 | 414 | 8.4E-8 | IPR012606 |
| SMART | SM00861 | Transket_pyr_3 | 493 | 598 | 0.0045 | IPR005475 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00730 (Thiamine metabolism)
map00730 (Thiamine metabolism)
ko00900 (Terpenoid backbone biosynthesis)
map00900 (Terpenoid backbone biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15560.1 | Deoxyxylulose-5-phosphate synthase. Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis | 0 |
| RefSeq | XP_048493021.1 | neurofilament medium polypeptide-like [Beta vulgaris subsp. vulgaris] | 0 |
| A0A7J6EK66 | 1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic OS=Cannabis sativa OX=3483 GN=DXS1 PE=2 SV=1 | 0 | |
| TrEMBL | W5S3Z2 | 1-deoxy-D-xylulose 5-phosphate synthase (Fragment) OS=Plectranthus barbatus OX=41228 GN=DXS PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||