Basic Information
Locus ID:
Sgl09104
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 43519634 | 43524599 | + | Sgl09104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 70,695.23 Da | 38.02 | 103.20 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 266 | 308 | 3.36239E-27 | - |
| Pfam | PF04564 | U-box domain | 262 | 332 | 2.7E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 389 | 428 | 2.1E-10 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 472 | 509 | 1.6E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 359 | 633 | 4.68E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 262 | 337 | 6.82E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 340 | 638 | 4.3E-52 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 10 | 136 | 3.1E-8 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 335 | 8.6E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 265 | 328 | 2.0E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 389 | 429 | 3.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 553 | 593 | 33.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 471 | 511 | 4.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 512 | 552 | 22.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 430 | 470 | 0.89 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 441 | 483 | 8.6624 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 261 | 335 | 43.787979 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 400 | 442 | 13.9474 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021717676.1 | U-box domain-containing protein 14 [Chenopodium quinoa] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVY3 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_135140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology