Basic Information
Locus ID:
Sgl08674
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB1 | 34279089 | 34284550 | + | Sgl08674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 197,166.56 Da | 44.63 | 81.41 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1168 | 1435 | 2.99346E-50 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1173 | 1415 | 5.4E-36 | IPR000477 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 129 | 269 | 4.0E-22 | IPR025558 |
| SUPERFAMILY | SSF56219 | DNase I-like | 682 | 915 | 1.31E-30 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1118 | 1399 | 2.05E-14 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 684 | 915 | 1.5E-31 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1154 | 1435 | 13.508391 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 471 | - | - |
| Coils | Coil | Coil | 1003 | 1023 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01050.1 | zinc ion binding;nucleic acid binding. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P16423 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EHM2 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |